| Gene set knowledge discovery with Enrichr Z Xie, A Bailey, MV Kuleshov, DJB Clarke, JE Evangelista, SL Jenkins, ... Current protocols 1 (3), e90, 2021 | 2507 | 2021 |
| ChEA3: transcription factor enrichment analysis by orthogonal omics integration AB Keenan, D Torre, A Lachmann, AK Leong, ML Wojciechowicz, V Utti, ... Nucleic acids research 47 (W1), W212-W224, 2019 | 777 | 2019 |
| Appyters: Turning Jupyter Notebooks into data-driven web apps DJB Clarke, M Jeon, DJ Stein, N Moiseyev, E Kropiwnicki, C Dai, Z Xie, ... Patterns 2 (3), 2021 | 99 | 2021 |
| Geneshot: search engine for ranking genes from arbitrary text queries A Lachmann, BM Schilder, ML Wojciechowicz, D Torre, MV Kuleshov, ... Nucleic acids research 47 (W1), W571-W577, 2019 | 79 | 2019 |
| modEnrichr: a suite of gene set enrichment analysis tools for model organisms MV Kuleshov, JEL Diaz, ZN Flamholz, AB Keenan, A Lachmann, ... Nucleic acids research 47 (W1), W183-W190, 2019 | 78 | 2019 |
| FAIRshake: toolkit to evaluate the FAIRness of research digital resources DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ... Cell systems 9 (5), 417-421, 2019 | 63 | 2019 |
| SigCom LINCS: data and metadata search engine for a million gene expression signatures JE Evangelista, DJB Clarke, Z Xie, A Lachmann, M Jeon, K Chen, ... Nucleic acids research 50 (W1), W697-W709, 2022 | 62 | 2022 |
| Connectivity mapping: methods and applications AB Keenan, ML Wojciechowicz, Z Wang, KM Jagodnik, SL Jenkins, ... Annual Review of Biomedical Data Science 2 (1), 69-92, 2019 | 49 | 2019 |
| Genetic driver mutations introduced in identical cell‐of‐origin in murine glioblastoma reveal distinct immune landscapes but similar response to checkpoint blockade Z Chen, CJ Herting, JL Ross, B Gabanic, M Puigdelloses Vallcorba, ... Glia 68 (10), 2148-2166, 2020 | 41 | 2020 |
| GPR84: an immune response dial? ML Wojciechowicz, A Ma’ayan Nature reviews. Drug discovery 19 (6), 374, 2020 | 37 | 2020 |
| Modulating the transcriptional landscape of SARS-CoV-2 as an effective method for developing antiviral compounds DA Hoagland, DJB Clarke, R Møller, Y Han, L Yang, ML Wojciechowicz, ... Biorxiv, 2020.07. 12.199687, 2020 | 29 | 2020 |
| Connectivity mapping identifies BI-2536 as a potential drug to treat diabetic kidney disease L Zhang, Z Wang, R Liu, Z Li, J Lin, ML Wojciechowicz, J Huang, K Lee, ... Diabetes 70 (2), 589-602, 2021 | 19 | 2021 |
| Getting started with LINCS datasets and tools Z Xie, E Kropiwnicki, ML Wojciechowicz, KM Jagodnik, I Shu, A Bailey, ... Current protocols 2 (7), e487, 2022 | 17 | 2022 |
| Transforming L1000 profiles to RNA-seq-like profiles with deep learning M Jeon, Z Xie, JE Evangelista, ML Wojciechowicz, DJB Clarke, A Ma’ayan BMC bioinformatics 23 (1), 374, 2022 | 16 | 2022 |
| FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources DJB Clarke, L Wang, A Jones, ML Wojciechowicz, D Torre, KM Jagodnik, ... BioRxiv, 657676, 2019 | 14 | 2019 |
| Predicting lyme disease from patients' peripheral blood mononuclear cells profiled with RNA-sequencing DJB Clarke, AW Rebman, A Bailey, ML Wojciechowicz, SL Jenkins, ... Frontiers in immunology 12, 636289, 2021 | 12 | 2021 |
| lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs GB Marino, ML Wojciechowicz, DJB Clarke, MV Kuleshov, Z Xie, M Jeon, ... Database 2023, baad009, 2023 | 9 | 2023 |
| Extracellular proteolytic cleavage of peptide-linked antibody-drug conjugates promotes bystander killing of cancer cells M Lam, J Lucas, A Maderna, H Wald, M Wojciechowicz, R Dushin, ... Cancer Res 74 (19 Suppl), 4837, 2014 | 8 | 2014 |
| Supplementary Figures for AB Keenan, D Torre, A Lachmann, AK Leong, ML Wojciechowicz | | |