| Comprehensive characterization of cancer driver genes and mutations MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ... Cell 173 (2), 371-385. e18, 2018 | 2439 | 2018 |
| Perspective on oncogenic processes at the end of the beginning of cancer genomics L Ding, MH Bailey, E Porta-Pardo, V Thorsson, A Colaprico, D Bertrand, ... Cell 173 (2), 305-320. e10, 2018 | 406 | 2018 |
| Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019 | 328 | 2019 |
| Predicting cancer drug response using a recommender system C Suphavilai, D Bertrand, N Nagarajan Bioinformatics 34 (22), 3907-3914, 2018 | 165 | 2018 |
| Detection and characterisation of a sixth Candida auris clade in Singapore: a genomic and phenotypic study C Suphavilai, KKK Ko, KM Lim, MG Tan, P Boonsimma, JJK Chu, SS Goh, ... The Lancet Microbe 5 (9), 2024 | 58* | 2024 |
| Group MCW MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ... Cancer Genome Atlas Research N, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart …, 2018 | 46 | 2018 |
| Predicting heterogeneity in clone-specific therapeutic vulnerabilities using single-cell transcriptomic signatures C Suphavilai, S Chia, A Sharma, L Tu, RP Da Silva, A Mongia, ... Genome Medicine 13, 1-14, 2021 | 42 | 2021 |
| PAGER: constructing PAGs and new PAG–PAG relationships for network biology Z Yue, MM Kshirsagar, T Nguyen, C Suphavilai, MT Neylon, L Zhu, ... Bioinformatics 31 (12), i250-i257, 2015 | 30 | 2015 |
| Emergence of SARS-CoV-2 spike mutations during prolonged infection in immunocompromised hosts KKK Ko, H Yingtaweesittikul, TT Tan, L Wijaya, DY Cao, SS Goh, ... Microbiology spectrum 10 (3), e00791-22, 2022 | 29 | 2022 |
| ConsensusDriver improves upon individual algorithms for predicting driver alterations in different cancer types and individual patients D Bertrand, S Drissler, BK Chia, JY Koh, C Li, C Suphavilai, IB Tan, ... Cancer research 78 (1), 290-301, 2018 | 21 | 2018 |
| TUGDA: task uncertainty guided domain adaptation for robust generalization of cancer drug response prediction from in vitro to in vivo settings R Peres da Silva, C Suphavilai, N Nagarajan Bioinformatics 37 (Supplement_1), i76-i83, 2021 | 19 | 2021 |
| CREAMMIST: an integrative probabilistic database for cancer drug response prediction H Yingtaweesittikul, J Wu, A Mongia, R Peres, K Ko, N Nagarajan, ... Nucleic Acids Research 51 (D1), D1242-D1248, 2023 | 14 | 2023 |
| SARS-CoV-2 N gene G29195T point mutation may affect diagnostic reverse transcription-PCR detection KKK Ko, NB Abdul Rahman, SYL Tan, KXL Chan, SS Goh, JHC Sim, ... Microbiology Spectrum 10 (1), e02223-21, 2022 | 13 | 2022 |
| CalmBelt: rapid SARS-CoV-2 genome characterisation for outbreak tracking H Yingtaweesittikul, K Ko, NA Rahman, SYL Tan, N Nagarajan, ... Frontiers in Medicine, 2600, 2021 | 12 | 2021 |
| Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny M Hunt, AS Hinrichs, D Anderson, L Karim, BL Dearlove, J Knaggs, ... BioRxiv, 2024 | 11 | 2024 |
| Linking sporadic hospital clusters during a community surge of the severe acute respiratory coronavirus virus 2 (SARS-CoV-2) B. 1.617. 2 delta variant: The utility of whole … LE Wee, KKK Ko, EP Conceicao, JXY Sim, NA Rahman, SYL Tan, ... Infection Control & Hospital Epidemiology 44 (6), 1014-1018, 2023 | 10 | 2023 |
| Clonal serotype 1c multidrug-resistant Shigella flexneri detected in multiple institutions by sentinel-site sequencing KKK Ko, JJK Chu, KM Lim, H Yingtaweesittikul, W Huang, SYL Tan, ... Frontiers in Medicine 9, 964640, 2022 | 4 | 2022 |
| Environmental contamination and evaluation of healthcare-associated SARS-CoV-2 transmission risk in temporary isolation wards during the COVID-19 pandemic LE Wee, S Arora, KKK Ko, EP Conceicao, KK Coleman, KY Tan, HB Tohid, ... American Journal of Infection Control 51 (4), 413-419, 2023 | 2 | 2023 |
| A method for developing regulatory gene set networks to characterize complex biological systems C Suphavilai, L Zhu, JY Chen BMC genomics 16, 1-12, 2015 | 2 | 2015 |
| MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes R Peres da Silva, C Suphavilai, N Nagarajan BMC bioinformatics 25 (Suppl 1), 153, 2024 | 1 | 2024 |
